Chapter 2 Preparing for the workshop

To prepare for this workshop, download and install the earliest RStudio and R versions. You should also download the data and some additional functions that we will use during this workshop:

R Script
Fish data
Arabidopsis data
Inverts data
glmm_funs (code for use in the GLMM section)

You can save these files by clicking on the links above, and right click + save on the webpage they open.

This workshop requires the following R packages:

lme4
MASS
vcdExtra
bbmle
MuMIn
ggplot2
DescTools
remotes
gridExtra
lattice

To install them from CRAN, run:

install.packages(c("lme4", "MASS", "vcdExtra", "bbmle", "MuMIn",
    "ggplot2", "DescTools", "remotes", "gridExtra", "lattice"),
    repos = "http://cran.us.r-project.org", quiet = TRUE)

To load these packages, run:

library(lme4)
library(MASS)
library(vcdExtra)
library(bbmle)
library(MuMIn)
library(ggplot2)
library(DescTools)
library(remotes)
library(gridExtra)
library(lattice)

You can also load the specific functions of this workshop by using:

source("data/glmm_funs.R")